Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00852.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1788
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34


Found at i:1521 original size:31 final size:31

Alignment explanation


    Indices: 1486--1551  Score: 105
    Period size: 31  Copynumber: 2.1  Consensus size: 31

       1476 TTCCATTAGC

                                  *        
       1486 AAATTTGTAGTCAGCCTTTCTGCAATGTTAA
          1 AAATTTGTAGTCAGCCTTTCTGAAATGTTAA

                          *               *
       1517 AAATTTGTAGTCAGTCTTTCTGAAATGTTAC
          1 AAATTTGTAGTCAGCCTTTCTGAAATGTTAA

                
       1548 AAAT
          1 AAAT

       1552 ATAGTTTGCG


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  31   32  1.00

ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39


Consensus pattern (31 bp):   
AAATTTGTAGTCAGCCTTTCTGAAATGTTAA
Done.