Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00861.F8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4663
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:347 original size:3 final size:3

Alignment explanation


    Indices: 339--425  Score: 72
    Period size: 3  Copynumber: 29.0  Consensus size: 3

        329 TGACTTCTTT

                                  *                   *   *        *     
        339 TGA TGA TGA T-A GTGA TTA TGA TGA TGA TGA TTA TTA TTG- TTA TGA
          1 TGA TGA TGA TGA -TGA TGA TGA TGA TGA TGA TGA TGA -TGA TGA TGA

                 *        *                                         
        384 TGA TTA TTG- TTA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
          1 TGA TGA -TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA

        426 ATACGAGTCC


Statistics
Matches: 68,  Mismatches: 10, Indels: 12
        0.76            0.11        0.13

Matches are distributed among these distances:
   2    3  0.04
   3   62  0.91
   4    3  0.04

ACGTcount: A:0.31, C:0.00, G:0.26, T:0.43


Consensus pattern (3 bp):   
TGA

Done.