Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00862.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1899
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28


Found at i:1817 original size:39 final size:39

Alignment explanation


    Indices: 1758--1833  Score: 143
    Period size: 39  Copynumber: 1.9  Consensus size: 39

       1748 TTGCGGGTAC

                                                   
       1758 TTCAATTTATGTACAAAGTTGTTGAATGTAGGGGAATAG
          1 TTCAATTTATGTACAAAGTTGTTGAATGTAGGGGAATAG

                *                                
       1797 TTCATTTTATGTACAAAGTTGTTGAATGTAGGGGAAT
          1 TTCAATTTATGTACAAAGTTGTTGAATGTAGGGGAAT

       1834 GTAGGGGAAT


Statistics
Matches: 36,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  39   36  1.00

ACGTcount: A:0.32, C:0.05, G:0.25, T:0.38


Consensus pattern (39 bp):   
TTCAATTTATGTACAAAGTTGTTGAATGTAGGGGAATAG
Done.