Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00865.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3169
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30


Found at i:2450 original size:16 final size:16

Alignment explanation


    Indices: 2426--2456  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       2416 CACATATGGA

                            
       2426 ATGAAAAGATTGTCCC
          1 ATGAAAAGATTGTCCC

                *          
       2442 ATGAGAAGATTGTCC
          1 ATGAAAAGATTGTCC

       2457 AAGAATTTTG


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26


Consensus pattern (16 bp):   
ATGAAAAGATTGTCCC
Done.