Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00886.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2229
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36


Found at i:236 original size:20 final size:20

Alignment explanation


    Indices: 211--250  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        201 TCTACAAAGC

                                
        211 ACTTTGCAAGGAACTTGGAT
          1 ACTTTGCAAGGAACTTGGAT

                                
        231 ACTTTGCAAGGAACTTGGAT
          1 ACTTTGCAAGGAACTTGGAT

        251 TGAGATAAAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30


Consensus pattern (20 bp):   
ACTTTGCAAGGAACTTGGAT

Found at i:2145 original size:31 final size:31

Alignment explanation


    Indices: 2078--2146  Score: 75
    Period size: 31  Copynumber: 2.2  Consensus size: 31

       2068 AACCATGTGA

                     *    *                
       2078 CTAAAATGAGAATAGTTTTTAACAATAGTGC
          1 CTAAAATGAAAATAATTTTTAACAATAGTGC

            *                   *  ** *    
       2109 TTAAAATGAAAATAATTTTTGACTGTGGTGC
          1 CTAAAATGAAAATAATTTTTAACAATAGTGC

                   
       2140 CTAAAAT
          1 CTAAAAT

       2147 AGAATTTTTA


Statistics
Matches: 30,  Mismatches: 8, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  31   30  1.00

ACGTcount: A:0.41, C:0.09, G:0.16, T:0.35


Consensus pattern (31 bp):   
CTAAAATGAAAATAATTTTTAACAATAGTGC
Done.