Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00281.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2204
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29


Found at i:44 original size:20 final size:20

Alignment explanation


    Indices: 21--58  Score: 67
    Period size: 20  Copynumber: 1.9  Consensus size: 20

         11 AAAAAGCAGA

                                
         21 GAGAGAAAATGAAAGAAAGT
          1 GAGAGAAAATGAAAGAAAGT

                    *         
         41 GAGAGAAAGTGAAAGAAA
          1 GAGAGAAAATGAAAGAAA

         59 ATTTAGACAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.61, C:0.00, G:0.32, T:0.08


Consensus pattern (20 bp):   
GAGAGAAAATGAAAGAAAGT

Found at i:47 original size:10 final size:10

Alignment explanation


    Indices: 24--58  Score: 52
    Period size: 10  Copynumber: 3.5  Consensus size: 10

         14 AAGCAGAGAG

                 *    
         24 AGAAAATGAA
          1 AGAAAGTGAA

                     *
         34 AGAAAGTGAG
          1 AGAAAGTGAA

                      
         44 AGAAAGTGAA
          1 AGAAAGTGAA

                 
         54 AGAAA
          1 AGAAA

         59 ATTTAGACAA


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  10   22  1.00

ACGTcount: A:0.63, C:0.00, G:0.29, T:0.09


Consensus pattern (10 bp):   
AGAAAGTGAA
Done.