Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00897.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2605
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.36


Found at i:2330 original size:16 final size:15

Alignment explanation


    Indices: 2309--2338  Score: 51
    Period size: 16  Copynumber: 1.9  Consensus size: 15

       2299 TCATGGGGTA

                            
       2309 TTTTCTTTTCTTTTTT
          1 TTTTCTTTT-TTTTTT

                          
       2325 TTTTCTTTTTTTTT
          1 TTTTCTTTTTTTTT

       2339 CCCCAAAGAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    5  0.36
  16    9  0.64

ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90


Consensus pattern (15 bp):   
TTTTCTTTTTTTTTT

Found at i:2339 original size:10 final size:11

Alignment explanation


    Indices: 2309--2338  Score: 51
    Period size: 11  Copynumber: 2.7  Consensus size: 11

       2299 TCATGGGGTA

                *      
       2309 TTTTCTTTTCT
          1 TTTTTTTTTCT

                       
       2320 TTTTTTTTTCT
          1 TTTTTTTTTCT

                    
       2331 TTTTTTTT
          1 TTTTTTTT

       2339 CCCCAAAGAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  11   18  1.00

ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90


Consensus pattern (11 bp):   
TTTTTTTTTCT
Done.