Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00902.N4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2901
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41


Found at i:1105 original size:73 final size:74

Alignment explanation


    Indices: 956--1112  Score: 291
    Period size: 73  Copynumber: 2.1  Consensus size: 74

        946 GTTAACGATT

                                                                             
        956 TAATAA-AATTTAGACAAATTTGATGAAAAATTGATCATAAAATTAAACACAAAAAGTTATTATT
          1 TAATAATAA-TTAGACAAATTTGATGAAAAATTGATCATAAAATTAAACACAAAAAGTTATTATT

                      
       1020 ATTAAATTAA
         65 ATTAAATTAA

                                                                             
       1030 TAATAATAATTAGACAAATTTGATGAAAAATTGATCAT-AAATTAAACACAAAAAGTTATTATTA
          1 TAATAATAATTAGACAAATTTGATGAAAAATTGATCATAAAATTAAACACAAAAAGTTATTATTA

                     
       1094 TTAAATTAA
         66 TTAAATTAA

                      
       1103 TAATAATAAT
          1 TAATAATAAT

       1113 AGCATGAGAG


Statistics
Matches: 82,  Mismatches: 0, Indels: 3
        0.96            0.00        0.04

Matches are distributed among these distances:
  73   45  0.55
  74   35  0.43
  75    2  0.02

ACGTcount: A:0.54, C:0.05, G:0.06, T:0.34


Consensus pattern (74 bp):   
TAATAATAATTAGACAAATTTGATGAAAAATTGATCATAAAATTAAACACAAAAAGTTATTATTA
TTAAATTAA
Done.