Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02463.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 253

Length: 422
ACGTcount: A:0.28, C:0.12, G:0.34, T:0.26


Found at i:36 original size:30 final size:30

Alignment explanation


    Indices: 1--62  Score: 90
    Period size: 30  Copynumber: 2.1  Consensus size: 30

                                           
          1 GGTGGTGGAGGAGCA-AGTGCAGGAGGATAT
          1 GGTGGTGGAGGAGCACA-TGCAGGAGGATAT

                       *           *      
         31 GGTGGTGGAGGGGCACATGCAGGTGGATAT
          1 GGTGGTGGAGGAGCACATGCAGGAGGATAT

              
         61 GG
          1 GG

         63 CAGTGGAGAA


Statistics
Matches: 29,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  30   28  0.97
  31    1  0.03

ACGTcount: A:0.23, C:0.08, G:0.52, T:0.18


Consensus pattern (30 bp):   
GGTGGTGGAGGAGCACATGCAGGAGGATAT

Found at i:69 original size:30 final size:30

Alignment explanation


    Indices: 5--70  Score: 80
    Period size: 30  Copynumber: 2.2  Consensus size: 30

          1 GGTG

                                        **
          5 GTGGAGGAGCAAGTGCAGGAGGATATGGTG
          1 GTGGAGGAGCAAGTGCAGGAGGATATGGCA

                   *            *          
         35 GTGGAGGGGCACA-TGCAGGTGGATATGGCA
          1 GTGGAGGAGCA-AGTGCAGGAGGATATGGCA

                  
         65 GTGGAG
          1 GTGGAG

         71 AAGGAGCTGG


Statistics
Matches: 31,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
  30   30  0.97
  31    1  0.03

ACGTcount: A:0.24, C:0.09, G:0.50, T:0.17


Consensus pattern (30 bp):   
GTGGAGGAGCAAGTGCAGGAGGATATGGCA

Found at i:121 original size:24 final size:24

Alignment explanation


    Indices: 90--146  Score: 71
    Period size: 24  Copynumber: 2.4  Consensus size: 24

         80 GAGGAGGTTT

                                     
         90 TGGTGGTGCAGGCGG-TCATGGTGG
          1 TGGTGGTGCAGGCGGTTC-TGGTGG

                    *   *           
        114 TGGTGGTGGAGGTGGTTCTGGTGG
          1 TGGTGGTGCAGGCGGTTCTGGTGG

               *     
        138 TGGAGGTGC
          1 TGGTGGTGC

        147 CGGTGTATAT


Statistics
Matches: 28,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  24   26  0.93
  25    2  0.07

ACGTcount: A:0.07, C:0.09, G:0.56, T:0.28


Consensus pattern (24 bp):   
TGGTGGTGCAGGCGGTTCTGGTGG
Done.