Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00915.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3060
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30


Found at i:791 original size:100 final size:100

Alignment explanation


    Indices: 618--817  Score: 391
    Period size: 100  Copynumber: 2.0  Consensus size: 100

        608 CTGCTGGTTC

                                                                             
        618 CGCAAGAGAGGTCTACTATATTGCTTCATATTTACTATTACTCTTGATAGTGGAAAGAATATTAA
          1 CGCAAGAGAGGTCTACTATATTGCTTCATATTTACTATTACTCTTGATAGTGGAAAGAATATTAA

                            *                  
        683 CCATATGAATTCTTTTGTATATCAATTTCTTTTTT
         66 CCATATGAATTCTTTTATATATCAATTTCTTTTTT

                                                                             
        718 CGCAAGAGAGGTCTACTATATTGCTTCATATTTACTATTACTCTTGATAGTGGAAAGAATATTAA
          1 CGCAAGAGAGGTCTACTATATTGCTTCATATTTACTATTACTCTTGATAGTGGAAAGAATATTAA

                                               
        783 CCATATGAATTCTTTTATATATCAATTTCTTTTTT
         66 CCATATGAATTCTTTTATATATCAATTTCTTTTTT

        818 TCTTTTTTTT


Statistics
Matches: 99,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 100   99  1.00

ACGTcount: A:0.30, C:0.14, G:0.12, T:0.43


Consensus pattern (100 bp):   
CGCAAGAGAGGTCTACTATATTGCTTCATATTTACTATTACTCTTGATAGTGGAAAGAATATTAA
CCATATGAATTCTTTTATATATCAATTTCTTTTTT
Done.