Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00921.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4457
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30


Found at i:91 original size:3 final size:3

Alignment explanation


    Indices: 77--117  Score: 73
    Period size: 3  Copynumber: 13.7  Consensus size: 3

         67 GCAACGCCAA

                     *                                            
         77 CAG CAG CGG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CA
          1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CA

        118 AGCTGAGTCC


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   3   36  1.00

ACGTcount: A:0.32, C:0.34, G:0.34, T:0.00


Consensus pattern (3 bp):   
CAG

Found at i:4041 original size:18 final size:18

Alignment explanation


    Indices: 4018--4053  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       4008 TATAGAAGTC

                         *    
       4018 AAACTTTCTAGCAGAATA
          1 AAACTTTCTAGCAAAATA

                              
       4036 AAACTTTCTAGCAAAATA
          1 AAACTTTCTAGCAAAATA

       4054 GGTAAAATGA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.47, C:0.17, G:0.08, T:0.28


Consensus pattern (18 bp):   
AAACTTTCTAGCAAAATA
Done.