Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00017.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3605
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32


Found at i:3125 original size:34 final size:34

Alignment explanation


    Indices: 3082--3148  Score: 134
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       3072 TGAGAAAGAC

                                              
       3082 AAACTATCAAAGTATCAAGTATAAGATCTCGATA
          1 AAACTATCAAAGTATCAAGTATAAGATCTCGATA

                                             
       3116 AAACTATCAAAGTATCAAGTATAAGATCTCGAT
          1 AAACTATCAAAGTATCAAGTATAAGATCTCGAT

       3149 TATCATCCAT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   33  1.00

ACGTcount: A:0.46, C:0.15, G:0.12, T:0.27


Consensus pattern (34 bp):   
AAACTATCAAAGTATCAAGTATAAGATCTCGATA
Done.