Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02470.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2280
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38


Found at i:661 original size:81 final size:81

Alignment explanation


    Indices: 553--714  Score: 193
    Period size: 81  Copynumber: 2.0  Consensus size: 81

        543 TTTGCTTAAT

                *             *   *               *        *       *    *    
        553 GTACCTTTTTGAATTTGTGACAGATTTTCAGTGGG-AATTTATTG-ATATTCTTTGTCACTTACT
          1 GTACATTTTTGAATTTGTAACAAATTTTCAGTGGGAAAATT-TTGCAGA-TCTTTATCACATACT

                              
        616 TGTGTATCTTGGCTGTTG
         64 TGTGTATCTTGGCTGTTG

                      *         *                            *          *    
        634 GTACATTTTTTAATTTGTAATAAATTTTCAGTGGGAAAATTTTGCAGATGTTTATCACATGCTTG
          1 GTACATTTTTGAATTTGTAACAAATTTTCAGTGGGAAAATTTTGCAGATCTTTATCACATACTTG

                            
        699 TGTATCTTGGCTGTTG
         66 TGTATCTTGGCTGTTG

        715 ACTTCAGAAT


Statistics
Matches: 68,  Mismatches: 11, Indels: 4
        0.82            0.13        0.05

Matches are distributed among these distances:
  81   62  0.91
  82    6  0.09

ACGTcount: A:0.22, C:0.11, G:0.20, T:0.47


Consensus pattern (81 bp):   
GTACATTTTTGAATTTGTAACAAATTTTCAGTGGGAAAATTTTGCAGATCTTTATCACATACTTG
TGTATCTTGGCTGTTG
Done.