Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00933.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2289
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30


Found at i:641 original size:13 final size:13

Alignment explanation


    Indices: 623--650  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

        613 GTTGCAACTA

                         
        623 GTGAATTGATATG
          1 GTGAATTGATATG

                         
        636 GTGAATTGATATG
          1 GTGAATTGATATG

              
        649 GT
          1 GT

        651 TTTCTTTTTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.29, C:0.00, G:0.32, T:0.39


Consensus pattern (13 bp):   
GTGAATTGATATG
Done.