Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00944.N7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2182
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35


Found at i:831 original size:23 final size:25

Alignment explanation


    Indices: 796--841  Score: 69
    Period size: 24  Copynumber: 1.9  Consensus size: 25

        786 TTATAATACT

                                     
        796 TTATAATATTTTTA-CTATTTTTTA
          1 TTATAATATTTTTAGCTATTTTTTA

                           *       
        820 TTAT-ATATTTTTAGTTATTTTT
          1 TTATAATATTTTTAGCTATTTTT

        842 ATAAAATTGA


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  23    9  0.45
  24   11  0.55

ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70


Consensus pattern (25 bp):   
TTATAATATTTTTAGCTATTTTTTA

Done.