Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00971.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 805

Length: 1343
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31


Found at i:1240 original size:14 final size:15

Alignment explanation


    Indices: 1221--1249  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

       1211 GATGTTTTGT

                           
       1221 TCAAGTACAA-AATC
          1 TCAAGTACAATAATC

                           
       1235 TCAAGTACAATAATC
          1 TCAAGTACAATAATC

       1250 ATTTGTGAAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14   10  0.71
  15    4  0.29

ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24


Consensus pattern (15 bp):   
TCAAGTACAATAATC
Done.