Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00974.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3399
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28


Found at i:204 original size:30 final size:30

Alignment explanation


    Indices: 168--225  Score: 107
    Period size: 30  Copynumber: 1.9  Consensus size: 30

        158 TTAAGTTGAG

                         *                
        168 CCATGAAATATTGTTGCATTTAAGCTGAAA
          1 CCATGAAATATTGCTGCATTTAAGCTGAAA

                                        
        198 CCATGAAATATTGCTGCATTTAAGCTGA
          1 CCATGAAATATTGCTGCATTTAAGCTGA

        226 TCTCATTCAT


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  30   27  1.00

ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33


Consensus pattern (30 bp):   
CCATGAAATATTGCTGCATTTAAGCTGAAA
Done.