Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00994.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1926
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30


Found at i:835 original size:66 final size:66

Alignment explanation


    Indices: 729--857  Score: 206
    Period size: 66  Copynumber: 2.0  Consensus size: 66

        719 TTGCACACGA

                    *                        *                               
        729 TGCATTTGGGGATTTTCAGAATGCTTCAAAACCGAGCACAACT-GCATTTCCTTCTAGCAGTTTC
          1 TGCATTTGAGGATTTTCAGAATGCTTCAAAACCAAGCACAA-TGGCATTTCCTTCTAGCAGTTTC

              
        793 AG
         65 AG

                                                         *            *    
        795 TGCATTTGAGGATTTTCAGAATGCTTCAAAACCAAGCACAATGGCGTTTCCTTCTAGCGGTTT
          1 TGCATTTGAGGATTTTCAGAATGCTTCAAAACCAAGCACAATGGCATTTCCTTCTAGCAGTTT

        858 TGGTTCAACT


Statistics
Matches: 58,  Mismatches: 4, Indels: 2
        0.91            0.06        0.03

Matches are distributed among these distances:
  65    1  0.02
  66   57  0.98

ACGTcount: A:0.26, C:0.22, G:0.20, T:0.33


Consensus pattern (66 bp):   
TGCATTTGAGGATTTTCAGAATGCTTCAAAACCAAGCACAATGGCATTTCCTTCTAGCAGTTTCA
G
Done.