Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00998.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 388

Length: 647
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30


Found at i:445 original size:16 final size:16

Alignment explanation


    Indices: 424--455  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

        414 AACTTCGTCG

                            
        424 GCTTGGCTGATTCTAA
          1 GCTTGGCTGATTCTAA

                            
        440 GCTTGGCTGATTCTAA
          1 GCTTGGCTGATTCTAA

        456 TTTTTCTCTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.19, C:0.19, G:0.25, T:0.38


Consensus pattern (16 bp):   
GCTTGGCTGATTCTAA
Done.