Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01015.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4341
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29


Found at i:74 original size:12 final size:12

Alignment explanation


    Indices: 39--77  Score: 60
    Period size: 12  Copynumber: 3.2  Consensus size: 12

         29 CTCTCCGAGC

                       *
         39 AAAAAAAAAAAA
          1 AAAAAAAAAAAG

                        
         51 AAAAAAAAAAAG
          1 AAAAAAAAAAAG

                 *      
         63 AAAAAGAAAAAG
          1 AAAAAAAAAAAG

               
         75 AAA
          1 AAA

         78 TCCAGTCAAA


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  12   25  1.00

ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00


Consensus pattern (12 bp):   
AAAAAAAAAAAG

Found at i:89 original size:1 final size:1

Alignment explanation


    Indices: 39--73  Score: 52
    Period size: 1  Copynumber: 35.0  Consensus size: 1

         29 CTCTCCGAGC

                                   *     *     
         39 AAAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

         74 GAAATCCAGT


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   1   30  1.00

ACGTcount: A:0.94, C:0.00, G:0.06, T:0.00


Consensus pattern (1 bp):   
A
Done.