Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00286.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1934
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34


Found at i:1832 original size:38 final size:38

Alignment explanation


    Indices: 1781--1872  Score: 116
    Period size: 38  Copynumber: 2.4  Consensus size: 38

       1771 TATGATGTTG

                                           *      
       1781 GATTGTTAAAATATTTAGTGTATATAAAGCTGTGAAAT
          1 GATTGTTAAAATATTTAGTGTATATAAAGCTATGAAAT

                           * *        *  *        
       1819 GATTGTTAAAATATTCATTGTATATAGAGTTATGAAAT
          1 GATTGTTAAAATATTTAGTGTATATAAAGCTATGAAAT

                              
       1857 GA-TG-TAAAATCATTTA
          1 GATTGTTAAAAT-ATTTA

       1873 AGTTTTACGT


Statistics
Matches: 47,  Mismatches: 6, Indels: 3
        0.84            0.11        0.05

Matches are distributed among these distances:
  36    6  0.13
  37    6  0.13
  38   35  0.74

ACGTcount: A:0.40, C:0.03, G:0.16, T:0.40


Consensus pattern (38 bp):   
GATTGTTAAAATATTTAGTGTATATAAAGCTATGAAAT
Done.