Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01024.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2976
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:2382 original size:22 final size:22

Alignment explanation


    Indices: 2354--2400  Score: 85
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       2344 ACTAAGAGCC

                                  
       2354 AAGGTTAAGAGATATAGAAAGG
          1 AAGGTTAAGAGATATAGAAAGG

                           *      
       2376 AAGGTTAAGAGATATGGAAAGG
          1 AAGGTTAAGAGATATAGAAAGG

               
       2398 AAG
          1 AAG

       2401 ATAGAGCTGA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  22   24  1.00

ACGTcount: A:0.49, C:0.00, G:0.34, T:0.17


Consensus pattern (22 bp):   
AAGGTTAAGAGATATAGAAAGG
Done.