Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01041.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3876
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38


Found at i:3050 original size:21 final size:21

Alignment explanation


    Indices: 3024--3066  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       3014 CAAGGGAACA

                                 
       3024 AGCAGTTCAAGATCTGGAGGT
          1 AGCAGTTCAAGATCTGGAGGT

                                 
       3045 AGCAGTTCAAGATCTGGAGGT
          1 AGCAGTTCAAGATCTGGAGGT

             
       3066 A
          1 A

       3067 AGGTATGAGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.30, C:0.14, G:0.33, T:0.23


Consensus pattern (21 bp):   
AGCAGTTCAAGATCTGGAGGT
Done.