Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01053.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 456

Length: 760
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30


Found at i:18 original size:11 final size:12

Alignment explanation


    Indices: 3--32  Score: 53
    Period size: 12  Copynumber: 2.6  Consensus size: 12

          1 AG

                        
          3 AAAGAAAA-AAA
          1 AAAGAAAAGAAA

                        
         14 AAAGAAAAGAAA
          1 AAAGAAAAGAAA

                   
         26 AAAGAAA
          1 AAAGAAA

         33 CTTTCTTTCC


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  11    8  0.44
  12   10  0.56

ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00


Consensus pattern (12 bp):   
AAAGAAAAGAAA
Done.