Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01054.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 958

Length: 1597
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:1199 original size:21 final size:22

Alignment explanation


    Indices: 1158--1200  Score: 54
    Period size: 21  Copynumber: 2.0  Consensus size: 22

       1148 TTCTTGAAAG

                            *     
       1158 TGCCTATTGGGATCATGGACTT
          1 TGCCTATTGGGATCATCGACTT

                                   
       1180 TGCC-ATTGGGATTC-TCGACTT
          1 TGCCTATTGGGA-TCATCGACTT

       1201 CCTTGTTAAG


Statistics
Matches: 19,  Mismatches: 1, Indels: 3
        0.83            0.04        0.13

Matches are distributed among these distances:
  21   13  0.68
  22    6  0.32

ACGTcount: A:0.16, C:0.21, G:0.26, T:0.37


Consensus pattern (22 bp):   
TGCCTATTGGGATCATCGACTT
Done.