Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01066.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 579

Length: 966
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29


Found at i:644 original size:46 final size:46

Alignment explanation


    Indices: 577--668  Score: 175
    Period size: 46  Copynumber: 2.0  Consensus size: 46

        567 TTGGCTAAAA

                                                          
        577 GTCTTTGATACGAACAATATATGAAGCTAGTTTGGTTTTCTCTTTC
          1 GTCTTTGATACGAACAATATATGAAGCTAGTTTGGTTTTCTCTTTC

                                   *                      
        623 GTCTTTGATACGAACAATATATGGAGCTAGTTTGGTTTTCTCTTTC
          1 GTCTTTGATACGAACAATATATGAAGCTAGTTTGGTTTTCTCTTTC

        669 AGAAGAGCTG


Statistics
Matches: 45,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  46   45  1.00

ACGTcount: A:0.23, C:0.15, G:0.18, T:0.43


Consensus pattern (46 bp):   
GTCTTTGATACGAACAATATATGAAGCTAGTTTGGTTTTCTCTTTC
Done.