Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02490.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 921

Length: 1536
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28


Found at i:113 original size:16 final size:16

Alignment explanation


    Indices: 92--122  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

         82 GGGTTTTTTC

                   *        
         92 AAAAAAAGAAAAAAGG
          1 AAAAAAAAAAAAAAGG

                           
        108 AAAAAAAAAAAAAAG
          1 AAAAAAAAAAAAAAG

        123 AGAGTAGCAA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00


Consensus pattern (16 bp):   
AAAAAAAAAAAAAAGG
Done.