Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01082.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 544

Length: 908
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32


Found at i:497 original size:18 final size:17

Alignment explanation


    Indices: 471--505  Score: 61
    Period size: 18  Copynumber: 2.0  Consensus size: 17

        461 TTATAGCCGA

                             
        471 AAAATAAAAATATAAAT
          1 AAAATAAAAATATAAAT

                              
        488 AAAATCAAAAATATAAAT
          1 AAAAT-AAAAATATAAAT

        506 TTTCTTGCTG


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  17    5  0.29
  18   12  0.71

ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23


Consensus pattern (17 bp):   
AAAATAAAAATATAAAT
Done.