Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02491.P4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2776
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.31


Found at i:949 original size:19 final size:19

Alignment explanation


    Indices: 916--954  Score: 53
    Period size: 20  Copynumber: 2.1  Consensus size: 19

        906 TGCAATTTTC

                  *             
        916 TTTTTGCCATACATCATATT
          1 TTTTTGACATACATC-TATT

                               
        936 TTTTTGACAT-CATCTATT
          1 TTTTTGACATACATCTATT

             
        954 T
          1 T

        955 GATTCTATTA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  18    5  0.28
  19    4  0.22
  20    9  0.50

ACGTcount: A:0.23, C:0.18, G:0.05, T:0.54


Consensus pattern (19 bp):   
TTTTTGACATACATCTATT

Found at i:2682 original size:42 final size:43

Alignment explanation


    Indices: 2605--2686  Score: 157
    Period size: 43  Copynumber: 1.9  Consensus size: 43

       2595 ATATAAGTAC

                                                       
       2605 GTGAATGTGATACCTTTCTTTGTTGAAAGAAAGGGTAAGTGTT
          1 GTGAATGTGATACCTTTCTTTGTTGAAAGAAAGGGTAAGTGTT

                                                    
       2648 GTGAATGTGATACCTTTCTTTGTTGAAAG-AAGGGTAAGT
          1 GTGAATGTGATACCTTTCTTTGTTGAAAGAAAGGGTAAGT

       2687 ATGCACAGGT


Statistics
Matches: 39,  Mismatches: 0, Indels: 1
        0.98            0.00        0.03

Matches are distributed among these distances:
  42   10  0.26
  43   29  0.74

ACGTcount: A:0.28, C:0.07, G:0.28, T:0.37


Consensus pattern (43 bp):   
GTGAATGTGATACCTTTCTTTGTTGAAAGAAAGGGTAAGTGTT
Done.