Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02491.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1795
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28


Found at i:1701 original size:42 final size:43

Alignment explanation


    Indices: 1624--1705  Score: 157
    Period size: 43  Copynumber: 1.9  Consensus size: 43

       1614 ATATAAGTAC

                                                       
       1624 GTGAATGTGATACCTTTCTTTGTTGAAAGAAAGGGTAAGTGTT
          1 GTGAATGTGATACCTTTCTTTGTTGAAAGAAAGGGTAAGTGTT

                                                    
       1667 GTGAATGTGATACCTTTCTTTGTTGAAAG-AAGGGTAAGT
          1 GTGAATGTGATACCTTTCTTTGTTGAAAGAAAGGGTAAGT

       1706 ATGCACAGGT


Statistics
Matches: 39,  Mismatches: 0, Indels: 1
        0.98            0.00        0.03

Matches are distributed among these distances:
  42   10  0.26
  43   29  0.74

ACGTcount: A:0.28, C:0.07, G:0.28, T:0.37


Consensus pattern (43 bp):   
GTGAATGTGATACCTTTCTTTGTTGAAAGAAAGGGTAAGTGTT
Done.