Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01116.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2521
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.32


Found at i:2463 original size:41 final size:41

Alignment explanation


    Indices: 2406--2489  Score: 159
    Period size: 41  Copynumber: 2.0  Consensus size: 41

       2396 GGTACCAGAT

                                      *              
       2406 CACTAGTTCAGTTTCCAATGTTTGAGTCATCTATCAGACAA
          1 CACTAGTTCAGTTTCCAATGTTTGAGCCATCTATCAGACAA

                                                     
       2447 CACTAGTTCAGTTTCCAATGTTTGAGCCATCTATCAGACAA
          1 CACTAGTTCAGTTTCCAATGTTTGAGCCATCTATCAGACAA

              
       2488 CA
          1 CA

       2490 GAGAATAAAG


Statistics
Matches: 42,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  41   42  1.00

ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32


Consensus pattern (41 bp):   
CACTAGTTCAGTTTCCAATGTTTGAGCCATCTATCAGACAA
Done.