Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01116.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1697
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28


Found at i:1639 original size:41 final size:41

Alignment explanation


    Indices: 1582--1665  Score: 159
    Period size: 41  Copynumber: 2.0  Consensus size: 41

       1572 GGTACCAGAT

                                      *              
       1582 CACTAGTTCAGTTTCCAATGTTTGAGTCATCTATCAGACAA
          1 CACTAGTTCAGTTTCCAATGTTTGAGCCATCTATCAGACAA

                                                     
       1623 CACTAGTTCAGTTTCCAATGTTTGAGCCATCTATCAGACAA
          1 CACTAGTTCAGTTTCCAATGTTTGAGCCATCTATCAGACAA

              
       1664 CA
          1 CA

       1666 GAGAATAAAG


Statistics
Matches: 42,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  41   42  1.00

ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32


Consensus pattern (41 bp):   
CACTAGTTCAGTTTCCAATGTTTGAGCCATCTATCAGACAA
Done.