Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01128.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3055
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.34


Found at i:402 original size:26 final size:26

Alignment explanation


    Indices: 368--450  Score: 157
    Period size: 26  Copynumber: 3.2  Consensus size: 26

        358 TTTCCTTGAA

                *                     
        368 CCTTGAGCGTTCAAGGTTTATGAAAT
          1 CCTTTAGCGTTCAAGGTTTATGAAAT

                                      
        394 CCTTTAGCGTTCAAGGTTTATGAAAT
          1 CCTTTAGCGTTCAAGGTTTATGAAAT

                                      
        420 CCTTTAGCGTTCAAGGTTTATGAAAT
          1 CCTTTAGCGTTCAAGGTTTATGAAAT

                 
        446 CCTTT
          1 CCTTT

        451 CTCTTTTCTT


Statistics
Matches: 56,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  26   56  1.00

ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39


Consensus pattern (26 bp):   
CCTTTAGCGTTCAAGGTTTATGAAAT
Done.