Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01131.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 847

Length: 1412
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33


Found at i:77 original size:7 final size:7

Alignment explanation


    Indices: 65--93  Score: 51
    Period size: 7  Copynumber: 4.3  Consensus size: 7

         55 AATTATTGGA

                   
         65 TTTCTTT
          1 TTTCTTT

                   
         72 TTTCTTT
          1 TTTCTTT

                   
         79 TTTCTTT
          1 TTTCTTT

                   
         86 TTT-TTT
          1 TTTCTTT

              
         92 TT
          1 TT

         94 ATAAATACAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   6    5  0.23
   7   17  0.77

ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90


Consensus pattern (7 bp):   
TTTCTTT
Done.