Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01135.P3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 942

Length: 1571
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.29


Found at i:329 original size:21 final size:21

Alignment explanation


    Indices: 300--344  Score: 63
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        290 CAAATCCGAC

                     *       *   
        300 CACCACCACCAGCACCAGCAA
          1 CACCACCACAAGCACCAACAA

                *                
        321 CACCGCCACAAGCACCAACAA
          1 CACCACCACAAGCACCAACAA

               
        342 CAC
          1 CAC

        345 AGTCGCCACC


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.40, C:0.51, G:0.09, T:0.00


Consensus pattern (21 bp):   
CACCACCACAAGCACCAACAA
Done.