Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01140.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4921
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31


Found at i:2962 original size:22 final size:23

Alignment explanation


    Indices: 2937--2989  Score: 56
    Period size: 22  Copynumber: 2.3  Consensus size: 23

       2927 AAGGAACTTG

                      *             
       2937 AATTGATATATAA-TAACTA-GAA
          1 AATT-ATATAGAATTAACTATGAA

                  *                
       2959 AATTATTTAGAATTAACTATGAA
          1 AATTATATAGAATTAACTATGAA

                    
       2982 AATGTATA
          1 AAT-TATA

       2990 AATATTACGA


Statistics
Matches: 25,  Mismatches: 3, Indels: 4
        0.78            0.09        0.12

Matches are distributed among these distances:
  21    6  0.24
  22   10  0.40
  23    6  0.24
  24    3  0.12

ACGTcount: A:0.51, C:0.04, G:0.09, T:0.36


Consensus pattern (23 bp):   
AATTATATAGAATTAACTATGAA
Done.