Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02492.F11

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4534
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30


Found at i:2313 original size:24 final size:24

Alignment explanation


    Indices: 2282--2327  Score: 74
    Period size: 24  Copynumber: 1.9  Consensus size: 24

       2272 GCTTCATATT

                                    
       2282 TATATATATGCATGTAATTCATCA
          1 TATATATATGCATGTAATTCATCA

                      *     *     
       2306 TATATATATGTATGTATTTCAT
          1 TATATATATGCATGTAATTCAT

       2328 TGTTGAGTTG


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  24   20  1.00

ACGTcount: A:0.35, C:0.09, G:0.09, T:0.48


Consensus pattern (24 bp):   
TATATATATGCATGTAATTCATCA
Done.