Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01147.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3145
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.26


Found at i:1253 original size:252 final size:252

Alignment explanation


    Indices: 803--1309  Score: 960
    Period size: 252  Copynumber: 2.0  Consensus size: 252

        793 ATGGTACAAA

                                          *                                  
        803 TGACTTGTCTGAAATTATGAACTATCTACCTGGGAACAGAACTGCTACTTCTGTTCAAAGGCCAA
          1 TGACTTGTCTGAAATTATGAACTATCTACCCGGGAACAGAACTGCTACTTCTGTTCAAAGGCCAA

            *                                                                
        868 TTGCAACCACTATTTCAAGAAAAAAGCATGCATCGTCCAAAAGTTCTTCAAGAATTGAGGACTTG
         66 GTGCAACCACTATTTCAAGAAAAAAGCATGCATCGTCCAAAAGTTCTTCAAGAATTGAGGACTTG

                                                      *                  *   
        933 ATGAAAGTTATTAATAGAGAAAAGAACGATCCAACAGCAGGAGAAATGGCAGGTATTTTGCGTGA
        131 ATGAAAGTTATTAATAGAGAAAAGAACGATCCAACAGCAGGACAAATGGCAGGTATTTTGCATGA

                                                                     
        998 TACTTTAGCACCAACTGAATCTTCGAAAGGGAACAAAATAGAGAAGGAAAAAAATAG
        196 TACTTTAGCACCAACTGAATCTTCGAAAGGGAACAAAATAGAGAAGGAAAAAAATAG

                                                                             
       1055 TGACTTGTCTGAAATTATGAACTATCTACCCGGGAACAGAACTGCTACTTCTGTTCAAAGGCCAA
          1 TGACTTGTCTGAAATTATGAACTATCTACCCGGGAACAGAACTGCTACTTCTGTTCAAAGGCCAA

                             *                                               
       1120 GTGCAACCACTATTTCAGGAAAAAAGCATGCATCGTCCAAAAGTTCTTCAAGAATTGAGGACTTG
         66 GTGCAACCACTATTTCAAGAAAAAAGCATGCATCGTCCAAAAGTTCTTCAAGAATTGAGGACTTG

                                                                             
       1185 ATGAAAGTTATTAATAGAGAAAAGAACGATCCAACAGCAGGACAAATGGCAGGTATTTTGCATGA
        131 ATGAAAGTTATTAATAGAGAAAAGAACGATCCAACAGCAGGACAAATGGCAGGTATTTTGCATGA

                                   *                                 
       1250 TACTTTAGCACCAACTGAATCTTTGAAAGGGAACAAAATAGAGAAGGAAAAAAATAG
        196 TACTTTAGCACCAACTGAATCTTCGAAAGGGAACAAAATAGAGAAGGAAAAAAATAG

               
       1307 TGA
          1 TGA

       1310 TTCAATTGAA


Statistics
Matches: 249,  Mismatches: 6, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 252  249  1.00

ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24


Consensus pattern (252 bp):   
TGACTTGTCTGAAATTATGAACTATCTACCCGGGAACAGAACTGCTACTTCTGTTCAAAGGCCAA
GTGCAACCACTATTTCAAGAAAAAAGCATGCATCGTCCAAAAGTTCTTCAAGAATTGAGGACTTG
ATGAAAGTTATTAATAGAGAAAAGAACGATCCAACAGCAGGACAAATGGCAGGTATTTTGCATGA
TACTTTAGCACCAACTGAATCTTCGAAAGGGAACAAAATAGAGAAGGAAAAAAATAG
Done.