Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01147.F9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3330
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28


Found at i:1564 original size:252 final size:252

Alignment explanation


    Indices: 1114--1620  Score: 960
    Period size: 252  Copynumber: 2.0  Consensus size: 252

       1104 ATGGTACAAA

                                          *                                  
       1114 TGACTTGTCTGAAATTATGAACTATCTACCTGGGAACAGAACTGCTACTTCTGTTCAAAGGCCAA
          1 TGACTTGTCTGAAATTATGAACTATCTACCCGGGAACAGAACTGCTACTTCTGTTCAAAGGCCAA

            *                                                                
       1179 TTGCAACCACTATTTCAAGAAAAAAGCATGCATCGTCCAAAAGTTCTTCAAGAATTGAGGACTTG
         66 GTGCAACCACTATTTCAAGAAAAAAGCATGCATCGTCCAAAAGTTCTTCAAGAATTGAGGACTTG

                                                      *                  *   
       1244 ATGAAAGTTATTAATAGAGAAAAGAACGATCCAACAGCAGGAGAAATGGCAGGTATTTTGCGTGA
        131 ATGAAAGTTATTAATAGAGAAAAGAACGATCCAACAGCAGGACAAATGGCAGGTATTTTGCATGA

                                                                     
       1309 TACTTTAGCACCAACTGAATCTTCGAAAGGGAACAAAATAGAGAAGGAAAAAAATAG
        196 TACTTTAGCACCAACTGAATCTTCGAAAGGGAACAAAATAGAGAAGGAAAAAAATAG

                                                                             
       1366 TGACTTGTCTGAAATTATGAACTATCTACCCGGGAACAGAACTGCTACTTCTGTTCAAAGGCCAA
          1 TGACTTGTCTGAAATTATGAACTATCTACCCGGGAACAGAACTGCTACTTCTGTTCAAAGGCCAA

                             *                                               
       1431 GTGCAACCACTATTTCAGGAAAAAAGCATGCATCGTCCAAAAGTTCTTCAAGAATTGAGGACTTG
         66 GTGCAACCACTATTTCAAGAAAAAAGCATGCATCGTCCAAAAGTTCTTCAAGAATTGAGGACTTG

                                                                             
       1496 ATGAAAGTTATTAATAGAGAAAAGAACGATCCAACAGCAGGACAAATGGCAGGTATTTTGCATGA
        131 ATGAAAGTTATTAATAGAGAAAAGAACGATCCAACAGCAGGACAAATGGCAGGTATTTTGCATGA

                                   *                                 
       1561 TACTTTAGCACCAACTGAATCTTTGAAAGGGAACAAAATAGAGAAGGAAAAAAATAG
        196 TACTTTAGCACCAACTGAATCTTCGAAAGGGAACAAAATAGAGAAGGAAAAAAATAG

               
       1618 TGA
          1 TGA

       1621 TTCAATTGAA


Statistics
Matches: 249,  Mismatches: 6, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 252  249  1.00

ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24


Consensus pattern (252 bp):   
TGACTTGTCTGAAATTATGAACTATCTACCCGGGAACAGAACTGCTACTTCTGTTCAAAGGCCAA
GTGCAACCACTATTTCAAGAAAAAAGCATGCATCGTCCAAAAGTTCTTCAAGAATTGAGGACTTG
ATGAAAGTTATTAATAGAGAAAAGAACGATCCAACAGCAGGACAAATGGCAGGTATTTTGCATGA
TACTTTAGCACCAACTGAATCTTCGAAAGGGAACAAAATAGAGAAGGAAAAAAATAG
Done.