Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01152.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 555

Length: 925
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29


Found at i:904 original size:63 final size:62

Alignment explanation


    Indices: 779--909  Score: 253
    Period size: 63  Copynumber: 2.1  Consensus size: 62

        769 CATGTTCGAA

                                                                          
        779 TGTTATTGTTTTGAGTAGCATATTTTGTAGTACTAATTATGGAAAAGTCATTATAAACGGAT
          1 TGTTATTGTTTTGAGTAGCATATTTTGTAGTACTAATTATGGAAAAGTCATTATAAACGGAT

                                                                           
        841 TGTTATTGTTTTGAGTAGCATATTTTGTAGTAACTAATTATGGAAAAGTCATTATAAACGGAT
          1 TGTTATTGTTTTGAGTAGCATATTTTGTAGT-ACTAATTATGGAAAAGTCATTATAAACGGAT

                  
        904 TGTTAT
          1 TGTTAT

        910 CTTTGTTTTT


Statistics
Matches: 68,  Mismatches: 0, Indels: 1
        0.99            0.00        0.01

Matches are distributed among these distances:
  62   31  0.46
  63   37  0.54

ACGTcount: A:0.32, C:0.06, G:0.19, T:0.43


Consensus pattern (62 bp):   
TGTTATTGTTTTGAGTAGCATATTTTGTAGTACTAATTATGGAAAAGTCATTATAAACGGAT
Done.