Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01153.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2991
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36


Found at i:1249 original size:24 final size:24

Alignment explanation


    Indices: 1213--1259  Score: 76
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1203 ATAGCCTGAT

                              *     
       1213 TAGTAGTGATATATGATCTTTGAA
          1 TAGTAGTGATATATGATCCTTGAA

                    *              
       1237 TAGTAGTGCTATATGATCCTTGA
          1 TAGTAGTGATATATGATCCTTGA

       1260 CTATATAGGC


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  24   21  1.00

ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40


Consensus pattern (24 bp):   
TAGTAGTGATATATGATCCTTGAA

Found at i:2830 original size:3 final size:3

Alignment explanation


    Indices: 2822--2847  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

       2812 GCAAGAGGTG

                                              
       2822 GTT GTT GTT GTT GTT GTT GTT GTT GT
          1 GTT GTT GTT GTT GTT GTT GTT GTT GT

       2848 AAATACATGA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.00, C:0.00, G:0.35, T:0.65


Consensus pattern (3 bp):   
GTT

Done.