Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01156.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5471
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36


Found at i:4350 original size:11 final size:11

Alignment explanation


    Indices: 4334--4358  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

       4324 GTATATAAAG

                       
       4334 CTTGTGAAGTA
          1 CTTGTGAAGTA

                       
       4345 CTTGTGAAGTA
          1 CTTGTGAAGTA

               
       4356 CTT
          1 CTT

       4359 TGTGTTCAGC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.24, C:0.12, G:0.24, T:0.40


Consensus pattern (11 bp):   
CTTGTGAAGTA

Found at i:4593 original size:42 final size:43

Alignment explanation


    Indices: 4534--4620  Score: 158
    Period size: 42  Copynumber: 2.0  Consensus size: 43

       4524 ACACATTGGG

                              *                        
       4534 ATTTAGATTTATATAAGCGTTTGGGTTAATGAT-AAAGGACAT
          1 ATTTAGATTTATATAAGCATTTGGGTTAATGATAAAAGGACAT

                                                       
       4576 ATTTAGATTTATATAAGCATTTGGGTTAATGATAAAAGGACAT
          1 ATTTAGATTTATATAAGCATTTGGGTTAATGATAAAAGGACAT

              
       4619 AT
          1 AT

       4621 GTGTACTTGG


Statistics
Matches: 43,  Mismatches: 1, Indels: 1
        0.96            0.02        0.02

Matches are distributed among these distances:
  42   32  0.74
  43   11  0.26

ACGTcount: A:0.38, C:0.05, G:0.20, T:0.38


Consensus pattern (43 bp):   
ATTTAGATTTATATAAGCATTTGGGTTAATGATAAAAGGACAT
Done.