Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01163.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 630

Length: 1051
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.27


Found at i:112 original size:22 final size:23

Alignment explanation


    Indices: 87--134  Score: 55
    Period size: 23  Copynumber: 2.1  Consensus size: 23

         77 CTGAATTTTT

                                    
         87 TTCT-TTTTGCCCCT-GAATTGCA
          1 TTCTGTTTT-CCCCTAGAATTGCA

                      *      *     
        109 TTCTGTTTTCTCCTAGATTTGCA
          1 TTCTGTTTTCCCCTAGAATTGCA

               
        132 TTC
          1 TTC

        135 GACCACCATC


Statistics
Matches: 22,  Mismatches: 2, Indels: 3
        0.81            0.07        0.11

Matches are distributed among these distances:
  22    8  0.36
  23   14  0.64

ACGTcount: A:0.12, C:0.25, G:0.12, T:0.50


Consensus pattern (23 bp):   
TTCTGTTTTCCCCTAGAATTGCA
Done.