Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01167.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6350
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32


Found at i:4124 original size:26 final size:26

Alignment explanation


    Indices: 4095--4150  Score: 96
    Period size: 26  Copynumber: 2.2  Consensus size: 26

       4085 TGGTACAAAT

                                       
       4095 TGATAATGGGTTAGGTAAATG-TTCCA
          1 TGATAATGGGTTAGGTAAATGCTT-CA

                                      
       4121 TGATAATGGGTTAGGTAAATGCTTCA
          1 TGATAATGGGTTAGGTAAATGCTTCA

                
       4147 TGAT
          1 TGAT

       4151 GGAAATTTCA


Statistics
Matches: 29,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
  26   27  0.93
  27    2  0.07

ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36


Consensus pattern (26 bp):   
TGATAATGGGTTAGGTAAATGCTTCA
Done.