Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01181.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 478

Length: 797
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29


Found at i:52 original size:23 final size:24

Alignment explanation


    Indices: 22--68  Score: 69
    Period size: 23  Copynumber: 2.0  Consensus size: 24

         12 TTATCGGTTA

                      *  *          
         22 AAGCAAAGGCCTGTTTAC-GGCTG
          1 AAGCAAAGGCATGCTTACAGGCTG

                                    
         45 AAGCAAAGGCATGCTTACAGGCTG
          1 AAGCAAAGGCATGCTTACAGGCTG

         69 TCACCATGGC


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  23   16  0.76
  24    5  0.24

ACGTcount: A:0.30, C:0.21, G:0.30, T:0.19


Consensus pattern (24 bp):   
AAGCAAAGGCATGCTTACAGGCTG
Done.