Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01189.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 633

Length: 1055
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.29


Found at i:917 original size:34 final size:34

Alignment explanation


    Indices: 874--939  Score: 105
    Period size: 34  Copynumber: 1.9  Consensus size: 34

        864 TGACTGCTAT

                                              
        874 TGATACTGTGATGGCCTAAGGCCCTAATGCATAC
          1 TGATACTGTGATGGCCTAAGGCCCTAATGCATAC

                          **          *     
        908 TGATACTGTGATGGTTTAAGGCCCTACTGCAT
          1 TGATACTGTGATGGCCTAAGGCCCTAATGCAT

        940 TTTTTTTACT


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  34   29  1.00

ACGTcount: A:0.24, C:0.21, G:0.24, T:0.30


Consensus pattern (34 bp):   
TGATACTGTGATGGCCTAAGGCCCTAATGCATAC
Done.