Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01190.M8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9601
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31


Found at i:5951 original size:18 final size:18

Alignment explanation


    Indices: 5928--5963  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       5918 TGTGTTATCA

                              
       5928 GGTTGCTTACTGATTTTC
          1 GGTTGCTTACTGATTTTC

                              
       5946 GGTTGCTTACTGATTTTC
          1 GGTTGCTTACTGATTTTC

       5964 TTTTCATATG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.11, C:0.17, G:0.22, T:0.50


Consensus pattern (18 bp):   
GGTTGCTTACTGATTTTC
Done.