Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01196.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7746
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34


Found at i:5155 original size:225 final size:225

Alignment explanation


    Indices: 4757--5206  Score: 774
    Period size: 225  Copynumber: 2.0  Consensus size: 225

       4747 GTTTTTGCTG

                                                           *     *           
       4757 GGCATTCATCAAGCTAGTTATAGAAGACTATCGAGCCATCGTAGCCTGACCTCTGAACATGTCTT
          1 GGCATTCATCAAGCTAGTTATAGAAGACTATCGAGCCATCGTAGCCTAACCTCCGAACATGTCTT

                            *              *                                 
       4822 CTAGTTTATCCAGAATTACTTTGGCAATATTGCAGCTCTTCAGCTGCTTATATAAAGTGTTGGTT
         66 CTAGTTTATCCAGAATCACTTTGGCAATATTACAGCTCTTCAGCTGCTTATATAAAGTGTTGGTT

                              *                                              
       4887 ATGCTTGCCAACATATAGTAATGAGCTATCTGATCAGACTCCTTGCAACATTGTCTAGCCTCAAT
        131 ATGCTTGCCAACATATAGCAATGAGCTATCTGATCAGACTCCTTGCAACATTGTCTAGCCTCAAT

                      *                   
       4952 TTGAGTAACCGGTGGGCGCTTATTATCAAA
        196 TTGAGTAACCAGTGGGCGCTTATTATCAAA

                                                                             
       4982 GGCATTCATCAAGCTAGTTATAGAAGACTATCGAGCCATCGTAGCCTAACCTCCGAACATGTCTT
          1 GGCATTCATCAAGCTAGTTATAGAAGACTATCGAGCCATCGTAGCCTAACCTCCGAACATGTCTT

                              *                     *                        
       5047 CTAGTTTATCCAGAATCATTTTGGCAATATTACAGCTCTTTAGCTGCTTATATAAAGTGTTGGTT
         66 CTAGTTTATCCAGAATCACTTTGGCAATATTACAGCTCTTCAGCTGCTTATATAAAGTGTTGGTT

                      *                         *          *      *    *     
       5112 ATGCTTGCCAGCATATAGCAATGAGCTATCTGATCATACTCCTTGCAGCATTGTTTAGCTTCAAT
        131 ATGCTTGCCAACATATAGCAATGAGCTATCTGATCAGACTCCTTGCAACATTGTCTAGCCTCAAT

                   *                      
       5177 TTGAGTAGCCAGTGGGCGCTTATTATCAAA
        196 TTGAGTAACCAGTGGGCGCTTATTATCAAA

       5207 AACTATTTTA


Statistics
Matches: 211,  Mismatches: 14, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
 225  211  1.00

ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33


Consensus pattern (225 bp):   
GGCATTCATCAAGCTAGTTATAGAAGACTATCGAGCCATCGTAGCCTAACCTCCGAACATGTCTT
CTAGTTTATCCAGAATCACTTTGGCAATATTACAGCTCTTCAGCTGCTTATATAAAGTGTTGGTT
ATGCTTGCCAACATATAGCAATGAGCTATCTGATCAGACTCCTTGCAACATTGTCTAGCCTCAAT
TTGAGTAACCAGTGGGCGCTTATTATCAAA

Found at i:5678 original size:23 final size:23

Alignment explanation


    Indices: 5648--5697  Score: 66
    Period size: 23  Copynumber: 2.2  Consensus size: 23

       5638 GTTACATAAC

                    *               
       5648 CATGAACTTAACACCT-ATCGCAT
          1 CATGAACTCAACA-CTGATCGCAT

                         *         
       5671 CATGAACTCAACATTGATCGCAT
          1 CATGAACTCAACACTGATCGCAT

                
       5694 CATG
          1 CATG

       5698 CACCAAAAAT


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  22    1  0.04
  23   23  0.96

ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26


Consensus pattern (23 bp):   
CATGAACTCAACACTGATCGCAT
Done.