Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01199.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 437

Length: 729
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31


Found at i:89 original size:25 final size:25

Alignment explanation


    Indices: 40--112  Score: 107
    Period size: 25  Copynumber: 3.0  Consensus size: 25

         30 TTTCCTCAAA

                             *       
         40 TCGGTAG-CC-CT-CTGCATCTCTG
          1 TCGGTAGCCCGCTGCTGTATCTCTG

                                     
         62 TCGGTAGCCCGCTGCTGTATCTCTG
          1 TCGGTAGCCCGCTGCTGTATCTCTG

                          *          
         87 TCGGTAGCCCGCTGTTGTATCTCTG
          1 TCGGTAGCCCGCTGCTGTATCTCTG

             
        112 T
          1 T

        113 TGACATCTGC


Statistics
Matches: 46,  Mismatches: 2, Indels: 3
        0.90            0.04        0.06

Matches are distributed among these distances:
  22    7  0.15
  23    2  0.04
  24    2  0.04
  25   35  0.76

ACGTcount: A:0.08, C:0.32, G:0.26, T:0.34


Consensus pattern (25 bp):   
TCGGTAGCCCGCTGCTGTATCTCTG
Done.