Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01201.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 610

Length: 1017
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.31


Found at i:108 original size:6 final size:6

Alignment explanation


    Indices: 97--122  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

         87 TCTTCAAAAT

                                          
         97 CCACCG CCACCG CCACCG CCACCG CC
          1 CCACCG CCACCG CCACCG CCACCG CC

        123 TCCTCCACCC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.15, C:0.69, G:0.15, T:0.00


Consensus pattern (6 bp):   
CCACCG

Found at i:208 original size:3 final size:3

Alignment explanation


    Indices: 170--199  Score: 60
    Period size: 3  Copynumber: 10.0  Consensus size: 3

        160 AACTTACCGG

                                                   
        170 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA
          1 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA

        200 AAACCACCAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.33, C:0.67, G:0.00, T:0.00


Consensus pattern (3 bp):   
CCA
Done.